PCR & Real-Time PCR

PCR & Real-Time PCR

The difference between PCR an qPCR

Bioline qPCR kitsPolymerase chain reaction (PCR) is a widely used molecular biology technique to amplify DNA and RNA sequences. To reach a detectable level, multiple identical copies of a DNA template are created. A PCR requires a thermocycler, a DNA polymerase, Nucleotides, Primers and a DNA template. Once the ingredients for the PCR have been mixed together, the amplification of the template can start using a thermocycler. The thermocycler will perform and repeat a cycle of different temperatures. There are three main stages during each PCR cycle:

Denaturation: The double stranded DNA is heated to separate it into two single strands

Annealing: The temperature is lowered to enable the DNA primers to attach (anneal) to the DNA template

Extending/Elongation: The temperature is raised to the optimal working temperature of the PCR enzyme, allowing the enzyme to create and the new strand of DNA, using the Nucleotides to build the strand.

After each PCR cycle, the number of DNA strands are doubled.

The exact temperature and time of each stage depend on the primer sequences, DNA fragment lenght and DNA Polymerase being used. In general the temperature of the denaturing stage is 94-95°C, annealing stage is between 50-65°C and extending stage is around 72°C.

Quantitative PCR (qPCR) will amplify a specific DNA template segment based upon the PCR primers as well. However, it will also allow measurement of the DNA template concentrations. The amplification of the DNA can be measured throughout each amplification cycle, due to the presence of an DNA binding dye, for example SYBR® Green. SYBR® binds only to double stranded DNA and once bound changes its structure releasing a fluorescent signal.

Since each PCR cycle accumulates the amount of double stranded PCR product in the reaction vessel, the signal will increase with each cycle parallel with the DNA concentration. Next to the DNA sample(s), a series of DNA standards will be amplified as well. These standard will help forming a calibration curve, which enables scientist to plot and determine the concentrations of their DNA samples.

And what about RT-PCR and Real-Time PCR?reverse transcriptase

qPCR and Real-time PCR are the same techniques, and are explained in the paragraph above. But RT-PCR means something different. A RT-PCR is short for Reverse Transcriptase PCR. This method allows the use of RNA as a template. With the use of an enzyme called reverse transcriptase, RNA is translated into complementary DNA (cDNA). Most commonly, RT-PCR serves as a first step in qPCR, which quantifies RNA transcripts in a biological sample. It is then called RT-qPCR.

To make this even more complex, the abbreviation frequently used for Real-Time PCR is RT-PCR.

Our portfolio of products for Cloning & Molecular Biology includes:

CleanNA CleanPCR

The CleanPCR kit is an efficient PCR and Next Gen library prep clean up system based on paramagnetic beads technology, providing an efficient purification of PCR amplicons. Find out more…

Meridian Bioline Reagents

Meridian Bioscience is a fully integrated life science company that develops, manufactures, markets and distributes a broad range of innovative diagnostic products.

They are dedicated to developing and delivering better solutions that give answers with speed, accuracy and simplicity that are redefining the possibilities of life from discovery to diagnosis. Their molecular reagents are used by biologists and other research scientists to perform test-assays and research in many fields from medical, biotechnology and marine biology to food and agriculture technology as well as forensic and environmental sciences, where life scientists have come to depend upon the outstanding quality and reliability of their reagents. One of their newest product lines is the range of qPCR mixes especially for the application of Liquid Biopsy. By using samples such as blood, urine, saliva and stool to monitor disease occurrence, there is less need for painful and invasive surgical biopsies.

Meridian has developed and manufactured a portfolio of more than 300 reagents and kits, many of them proprietary, for molecular biology, cell analysis and nucleic acid and protein separation and purification. Meridian is an ISO 13485 certified company and one of the world’s few manufacturers of ultra-pure dNTPs, as well as a variety of enzymes and biochemicals. . Find out more…

Also read more about what is CRISPR-Cas9.

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